R for Graphical Clinical Trial Reporting
summary
HTML clinical-trial reports are generated with an hreport workflow built on R, RMarkdown, knitr, plotly, Hmisc and HTML5 and replace bulky tables with hover text that shows numerator/denominator detail on demand. High-level functions produce accrual, exclusion, descriptive, adverse-event, time-to-event and longitudinal sections; captions and navigation are auto-generated. Continuous outcomes use dense histograms (typically 100 or 200 bins) plus quantiles and means; Kaplan–Meier displays show a continuous number at risk as a function of time and traces can be toggled interactively.
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chapters (15)
- 0:00Intro
- 0:38Full Interactivity
- 1:48R Software: plotly Package
- 2:33New plotly Graphics Functions in Hmisc and rms Packages
- 4:01High-Level Abstractions
- 4:55Some Standard RCT Report Components
- 5:31RCT Report Philosophy
- 6:13Philosophy, continued
- 6:55R Packages greport (PDF) and hreport (HTML)
- 8:24High-Level Functions, continued
- 8:51New HTML Model: hreport Package
- 10:25Example Closed Meeting Data Monitoring Con Report
- 11:58Accrual
- 13:39Baseline Variables
- 17:21Incidence of Adverse Events at Any Follow-up
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