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Ron Shamir

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titleconferencedate
Multi-Omic Integration for Understanding DiseaseComputational Challenges in Very Large-Scale 'Omics'2022-07-18
Benchmarks on 10 TCGA cancers using three omics (mRNA, miRNA, methylation) produce a kernel neighbor–based integrator called NEMO that averages per-omic…
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Module Discovery in 3-way DataNetwork Biology 20162016-04-11
Probabilistic model for three-way data (subjects × rows × time) that finds a core gene/parcel set plus subject-specific rows and subject-specific time…
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Joint Analysis of Multiple Cancer Types for Revealing Disease-Specific Genomic EventsComputational Cancer Biology 20162016-02-01
Joint analysis uses a curated compendium of 13,000 GEO profiles (170 datasets, 17 platforms) and COSMIC whole‑exome calls (~9,000 patients plus TCGA) mapped to…
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Some Current Computational Challenges in BioinformaticsKARPfest802015-10-17
Overview of concrete problems and a working solution: sequencing volume grows exponentially (about 600 billion bases per day on new machines) and the $1,000…
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