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Anshul Kundaje

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Interpreting Deep Learning Models Of Functional Genomics Data To Decode Regulatory Sequence...Interpretable Machine Learning in Natural and Social Sciences (2022)2022-06-27
Dilated convolutional neural networks map DNA sequence to genome-wide molecular profiles at single-base resolution across hundreds to thousands of cell…
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Panel on Interpretability in the Biological SciencesInterpretable Machine Learning in Natural and Social Sciences (2022)2022-06-27
Genome-scale work treats a three billion base input where true positive binding sites number 2,000–20,000 positive sites per factor, yet neural nets trained on…
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Dynamics of 3D Enhancer-Gene Associations Across Diverse Human Cell Types and TissuesNetwork Biology 20162016-04-11
A hierarchical probabilistic mixed‑membership model links chromatin and expression across 127 Roadmap+ENCODE cell types to map enhancers to genes. The pipeline…
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